1JMF

CONTRIBUTIONS OF ORIENTATION AND HYDROGEN BONDING TO CATALYSIS IN ASN-229 MUTANTS OF THYMIDYLATE SYNTHASE

Structural Biology Knowledgebase: 1JMF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1JMF

Classification: TRANSFERASE

Total Structure Weight: 36896.01

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDYLATE SYNTHASE A 316 Lactobacillus casei EC#: 2.1.1.45 IUBMB
Mutation: N229A
Gene Name(s): thyA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UMP
Query on UMP

A 2'-DEOXYURIDINE 5'-MONOPHOSPHATE
DUMP (Synonym)
C9 H13 N2 O8 P
JSRLJPSBLDHEIO-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
UMP Ki: 2260 nM (99) BindingDB

Kd: 1700 nM  BindingMOAD
Kd: 1700 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.198
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.50 α = 90.00
b = 78.50 β = 90.00
c = 230.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-09-13
  • Released Date: 1998-01-28
  • Deposition author(s): Finer-Moore, J., Stroud, R.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values