1JLX

AGGLUTININ IN COMPLEX WITH T-DISACCHARIDE

Structural Biology Knowledgebase: 1JLX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.196

Literature

Macromolecules
Sequence Display for 1JLX

Classification: LECTIN

Total Structure Weight: 70636.30

Macromolecule Entities
Molecule Chains Length Organism Details
AGGLUTININ A, B 303 Amaranthus caudatus Mutation: N14H, E122Q, T163G, N227D, E276G, I287N, S301Q
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A2G
Query on A2G

A, B N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
C8 H15 N O6
OVRNDRQMDRJTHS-CBQIKETKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

A, B BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MBN
Query on MBN

A, B TOLUENE
C7 H8
YXFVVABEGXRONW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FOR
Query on FOR

A, B FORMYL GROUP
C H2 O
WSFSSNUMVMOOMR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.196
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.30 α = 90.00
b = 99.20 β = 90.00
c = 66.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-07-23
  • Released Date: 1997-12-03
  • Deposition author(s): Transue, T.R., Smith, A.K., Mo, H., Goldstein, I.J., Saper, M.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4