1JL5

Novel Molecular Architecture of YopM-a Leucine-rich Effector Protein from Yersinia pestis

Structural Biology Knowledgebase: 1JL5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1JL5

Classification: Toxin

Total Structure Weight: 51789.70

Macromolecule Entities
Molecule Chains Length Organism Details
outer protein YopM A 454 Yersinia pestis Gene Name(s): yopM yop48 YPCD1.26c y5054 y0059 YP_pCD60
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.220
  • Space Group: I 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 149.43 α = 90.00
b = 149.43 β = 90.00
c = 191.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-15
  • Released Date: 2001-10-10
  • Deposition author(s): Evdokimov, A.G., Anderson, D.E., Routzahn, K.M., Waugh, D.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4