1JKJ

E. coli SCS

Structural Biology Knowledgebase: 1JKJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 1JKJ

Classification: LIGASE

Total Structure Weight: 145973.11

Macromolecule Entities
Molecule Chains Length Organism Details
succinyl-CoA synthetase alpha subunit A, D 288 Escherichia coli EC#: 6.2.1.5 IUBMB
Gene Name(s): sucD b0729 JW0718
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
succinyl-CoA synthetase beta subunit B, E 388 Escherichia coli EC#: 6.2.1.5 IUBMB
Gene Name(s): sucC b0728 JW0717
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

A, B, D, E COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, D PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.192
  • Space Group: P 43 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.63 α = 90.00
b = 96.63 β = 90.00
c = 386.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-12
  • Released Date: 2002-01-30
  • Deposition author(s): Fraser, M.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update