1JK9

Heterodimer between H48F-ySOD1 and yCCS

Structural Biology Knowledgebase: 1JK9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1JK9

Classification: OXIDOREDUCTASE

Total Structure Weight: 86682.88

Macromolecule Entities
Molecule Chains Length Organism Details
superoxide dismutase A, C 153 Saccharomyces cerevisiae EC#: 1.15.1.1 IUBMB
Mutation: H48F
Gene Name(s): SOD1 Gene View YJR104C J1968
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
copper chaperone for superoxide dismutase B, D 249 Saccharomyces cerevisiae Gene Name(s): CCS1 LYS7 YMR038C YM9532.03C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.217
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 104.09 α = 90.00
b = 104.09 β = 90.00
c = 233.71 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-11
  • Released Date: 2001-09-05
  • Deposition author(s): Lamb, A.L., Torres, A.S., O'Halloran, T.V., Rosenzweig, A.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4