1JJC

Crystal structure at 2.6A resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese

Structural Biology Knowledgebase: 1JJC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1JJC

Classification: LIGASE

Total Structure Weight: 126676.31

Macromolecule Entities
Molecule Chains Length Organism Details
PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN A 350 Thermus thermophilus EC#: 6.1.1.20 IUBMB
Fragment: ALPHA CHAIN
Gene Name(s): pheS TTHA1958
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN B 785 Thermus thermophilus EC#: 6.1.1.20 IUBMB
Fragment: BETA CHAIN
Gene Name(s): pheT TTHA1959
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FA5
Query on FA5

A ADENOSINE-5'-[PHENYLALANINYL-PHOSPHATE]
C19 H23 N6 O8 P
ZFNOOEXYTZPIQS-URQYDQELSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.216
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 173.40 α = 90.00
b = 173.40 β = 90.00
c = 138.40 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-04
  • Released Date: 2001-11-02
  • Deposition author(s): Safro, M.G., Fishman, R., Moor, N., Ankilova, V.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values