1JIL

Crystal structure of S. aureus TyrRS in complex with SB284485

Structural Biology Knowledgebase: 1JIL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 1JIL

Classification: LIGASE

Total Structure Weight: 48040.34

Macromolecule Entities
Molecule Chains Length Organism Details
tyrosyl-tRNA synthetase A 420 Staphylococcus aureus EC#: 6.1.1.1 IUBMB
Gene Name(s): tyrS NWMN_1622
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
485
Query on 485

A [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN- 2-YL)- ACETIC ACID
SB-284485 (Synonym)
C17 H24 N2 O8
KUCHJUZRDGYEDY-HRNUQJICSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
485 IC50: 4 nM (100) BindingDB

IC50: 4 nM  BindingMOAD
IC50: 4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.183
  • Space Group: I 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 66.00 α = 90.00
b = 102.90 β = 90.00
c = 139.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-02
  • Released Date: 2001-10-26
  • Deposition author(s): Qiu, X., Janson, C.A., Smith, W.W., Jarvest, R.L.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4