1JIK

Crystal structure of S. aureus TyrRS in complex with SB-243545

Structural Biology Knowledgebase: 1JIK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1JIK

Classification: LIGASE

Total Structure Weight: 48127.46

Macromolecule Entities
Molecule Chains Length Organism Details
tyrosyl-tRNA synthetase A 420 Staphylococcus aureus EC#: 6.1.1.1 IUBMB
Gene Name(s): tyrS NWMN_1622
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
545
Query on 545

A [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN- 2-YL)- ACETIC ACID BUTYL ESTER
SB-243545 (Synonym)
C21 H33 N3 O9
IPZUTNGJHRAITA-FULAYSDLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
545 IC50: 0.2 nM (100) BindingDB

N/A in BindingMoad
IC50: 0.2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.205
  • Space Group: I 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 66.62 α = 90.00
b = 105.38 β = 90.00
c = 140.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-02
  • Released Date: 2001-10-26
  • Deposition author(s): Qiu, X., Janson, C.A., Smith, W.W., Jarvest, R.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values