1JII

Crystal structure of S. aureus TyrRS in complex with SB-219383

Structural Biology Knowledgebase: 1JII SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.269

Literature

Macromolecules
Sequence Display for 1JII

Classification: LIGASE

Total Structure Weight: 48069.34

Macromolecule Entities
Molecule Chains Length Organism Details
tyrosyl-tRNA synthetase A 420 Staphylococcus aureus EC#: 6.1.1.1 IUBMB
Gene Name(s): tyrS NWMN_1622
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
383
Query on 383

A [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (2,4,5,8-TETRAHYDROXY-7-OXA-2-AZA-BICYCLO[3.2.1]OCT- 3-YL)- ACETIC ACID
SB-219383 (Synonym)
C17 H23 N3 O9
JOBDOAKLPNMGKV-OEUXZGCXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
383 IC50: 1 nM (100) BindingDB

N/A in BindingMoad
IC50: 1 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.269
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 71.56 α = 90.00
b = 98.45 β = 90.00
c = 142.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-02
  • Released Date: 2001-10-26
  • Deposition author(s): Qiu, X., Janson, C.A., Smith, W.W., Jarvest, R.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values