1JGM

High Resolution Structure of the Cadmium-containing Phosphotriesterase from Pseudomonas diminuta


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 1JGM

Classification: HYDROLASE

Total Structure Weight: 75288.76

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphotriesterase A, B 336 Brevundimonas diminuta EC#: 3.1.8.1 IUBMB
Mutation: K169X
Gene Name(s): opd
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEL
Query on PEL

A, B 2-PHENYL-ETHANOL
C8 H10 O
WRMNZCZEMHIOCP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
KCX
Query on KCX
A, B L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.202
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 128.45 α = 90.00
b = 90.03 β = 91.72
c = 68.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-26
  • Released Date: 2001-07-04
  • Deposition author(s): Benning, M.M., Shim, H., Raushel, F.M., Holden, H.M.
  • Previous versions: 1I03

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance