1JGL

Crystal structure of immunoglobulin Fab fragment complexed with 17-beta-estradiol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1JGL

Classification: IMMUNE SYSTEM

Total Structure Weight: 47397.77

Macromolecule Entities
Molecule Chains Length Organism Details
Ig kappa-chain L 214 Mus musculus Mutation: L118F
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ig gamma-1-chain H 218 Mus musculus Fragment: residues 1-215

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EST
Query on EST

L ESTRADIOL
C18 H24 O2
VOXZDWNPVJITMN-ZBRFXRBCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
EST N/A in BindingDB
Kd: 2 nM  BindingMOAD
Kd: 2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.199
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 48.21 α = 90.00
b = 64.50 β = 90.00
c = 165.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-26
  • Released Date: 2001-10-10
  • Deposition author(s): Lamminmaki, U., Kankare, J.A.

Revision History

  • Version 1_0: 2001-10-10

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance