1JFI

Crystal Structure of the NC2-TBP-DNA Ternary Complex

Structural Biology Knowledgebase: 1JFI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 1JFI

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 63076.41


Macromolecule Entities
Molecule Chains Length Organism Details
Transcription Regulator NC2 alpha chain A 98 Homo sapiens Fragment: RESIDUES 1-77
Gene Name(s): DRAP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Transcription Regulator NC2 beta chain B 179 Homo sapiens Gene Name(s): DR1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TATA-BOX-BINDING PROTEIN (TBP) C 185 Homo sapiens Fragment: RESIDUES 359-539
Gene Name(s): TBP Gene View GTF2D1 TF2D TFIID
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3' D 19 synthetic 19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE TOP STRAND
5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3' E 19 synthetic 19 BASE-PAIR TATA-CONTAINING OLIGONUCLEOTIDE BOTTOM STRAND


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.233
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.68 α = 90.00
b = 119.07 β = 90.00
c = 155.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-20
  • Released Date: 2001-07-11
  • Deposition author(s): Kamada, K., Shu, F., Chen, H., Malik, S., Stelzer, G., Roeder, R.G., Meisterernst, M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4