1JF9

Crystal Structure of selenocysteine lyase

Structural Biology Knowledgebase: 1JF9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1JF9

Classification: LYASE

Total Structure Weight: 44872.30

Macromolecule Entities
Molecule Chains Length Organism Details
SELENOCYSTEINE LYASE A 408 Escherichia coli EC#: 2.8.1.7 IUBMB
Gene Name(s): sufS csdB ynhB b1680 JW1670
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.178
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 126.38 α = 90.00
b = 126.38 β = 90.00
c = 133.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-20
  • Released Date: 2001-07-04
  • Deposition author(s): Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2015-01-21
    Type: Refinement description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values