1JDY

RABBIT MUSCLE PHOSPHOGLUCOMUTASE

Structural Biology Knowledgebase: 1JDY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1JDY

Classification: PHOSPHOTRANSFERASE

Total Structure Weight: 123578.05

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOGLUCOMUTASE A, B 561 Oryctolagus cuniculus EC#: 5.4.2.2 IUBMB
Gene Name(s): PGM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A, B L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.186
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 174.42 α = 90.00
b = 174.42 β = 90.00
c = 101.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-07-11
  • Released Date: 1997-03-12
  • Deposition author(s): Ray Junior, W.J., Baranidharan, S., Liu, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4