1JDG

Solution Structure of a Trans-Opened (10S)-dA Adduct of (+)-(7S,8R,9S,10R)-7,8-Dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a fully Complementary DNA Duplex

Structural Biology Knowledgebase: 1JDG SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 11
  • Conformers Submitted: 1
  • Selection Criteria:

Literature

Macromolecules
Sequence Display for 1JDG

Classification: DNA

Total Structure Weight: 7013.78

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*GP*TP*CP*(BPA)AP*CP*GP*AP*GP*G)-3' A 11 synthetic
5'-D(*CP*CP*TP*CP*GP*TP*GP*AP*CP*CP*G)-3' B 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BPA
Query on BPA

A 7S,8R,9R-TRIHYDROXY-7,8,9,10-TETRAHYDRO BENZO[A]PYRENE
C20 H16 O3
GFANZDFKCCJYRF-UXPWSPDFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 11
  • Conformers Submitted: 1
  • Selection Criteria: --

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2001-06-13
  • Released Date: 2001-07-04
  • Deposition author(s): Pradhan, P., Tirumala, S., Liu, X., Sayer, J.M., Jerina, D.M., Yeh, H.J.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4