1JCJ

OBSERVATION OF COVALENT INTERMEDIATES IN AN ENZYME MECHANISM AT ATOMIC RESOLUTION

Structural Biology Knowledgebase: 1JCJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Observed: 0.142

Literature

Macromolecules
Sequence Display for 1JCJ

Classification: LYASE

Total Structure Weight: 56214.50

Macromolecule Entities
Molecule Chains Length Organism Details
DEOXYRIBOSE-PHOSPHATE ALDOLASE A, B 260 Escherichia coli EC#: 4.1.2.4 IUBMB
Mutation: K201L
Gene Name(s): deoC dra thyR b4381 JW4344
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HPD
Query on HPD

A, B 1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE
OPEN FORM OF 2'-DEOXY-RIBOFURANOSE-5'-PHOSPHATE (Synonym)
C5 H13 O7 P
YCHBTVQJICBXEI-CRCLSJGQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Observed: 0.142
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.54 α = 90.00
b = 41.99 β = 98.32
c = 144.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-09
  • Released Date: 2001-10-31
  • Deposition author(s): Heine, A., DeSantis, G., Luz, J.G., Mitchell, M., Wong, C.-H., Wilson, I.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4