1JAP

COMPLEX OF PRO-LEU-GLY-HYDROXYLAMINE WITH THE CATALYTIC DOMAIN OF MATRIX METALLO PROTEINASE-8 (MET80 FORM)

Structural Biology Knowledgebase: 1JAP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Observed: 0.194

Literature

Macromolecules
Sequence Display for 1JAP

Classification: COMPLEX (METALLOPROTEASE / INHIBITOR)

Total Structure Weight: 18623.19

Macromolecule Entities
Molecule Chains Length Organism Details
MATRIX METALLO PROTEINASE-8 (MET80 FORM) A 163 Homo sapiens EC#: 3.4.24.34 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 86 - 242
Details: MMP-8 IS IDENTICAL TO THE HUMAN NEUTROPHIL COLLAGENASE
Gene Name(s): MMP8 Gene View CLG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PRO-LEU-GLY-HYDROXYLAMINE I 4 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000404
Query on PRD_000404
I L-prolyl-L-leucyl-N-hydroxyglycinamide Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Observed: 0.194
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 33.09 α = 90.00
b = 69.37 β = 90.00
c = 72.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-03-11
  • Released Date: 1996-07-11
  • Deposition author(s): Bode, W., Reinemer, P., Huber, R., Kleine, T., Schnierer, S., Tschesche, H.

Revision History

  • 2013-02-27
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4