1J90

Crystal Structure of Drosophila Deoxyribonucleoside Kinase

Structural Biology Knowledgebase: 1J90 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 1J90

Classification: TRANSFERASE

Total Structure Weight: 54460.34

Macromolecule Entities
Molecule Chains Length Organism Details
Deoxyribonucleoside kinase A, B 230 Drosophila melanogaster EC#: 2.7.1.145 IUBMB
Fragment: Truncation mutant
Gene Name(s): dnk CG5452
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DCZ
Query on DCZ

A, B 2'-DEOXYCYTIDINE
C9 H13 N3 O4
CKTSBUTUHBMZGZ-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.238
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.46 α = 90.00
b = 60.75 β = 90.00
c = 67.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-23
  • Released Date: 2001-11-28
  • Deposition author(s): Johansson, K., Ramaswamy, S., Ljungkrantz, C., Knecht, W., Piskur, J., Munch-Petersen, B., Eriksson, S., Eklund, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4