1J8E

Crystal structure of ligand-binding repeat CR7 from LRP

Structural Biology Knowledgebase: 1J8E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1J8E

Classification: SIGNALING PROTEIN

Total Structure Weight: 4857.11

Macromolecule Entities
Molecule Chains Length Organism Details
LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 1 A 44 Homo sapiens Fragment: COMPLEMENT-LIKE REPEAT 7 (CR7), LDL-RECEPTOR CLASS A 7
Mutation: C1G
Gene Name(s): LRP1 Gene View A2MR APR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.186
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 27.59 α = 90.00
b = 35.36 β = 90.00
c = 36.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-21
  • Released Date: 2001-12-19
  • Deposition author(s): Simonovic, M., Dolmer, K., Huang, W., Strickland, D.K., Volz, K., Gettins, P.G.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4