1J85

Structure of YibK from Haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA (guanosine-2'-O-) methyltransferase (SpoU)

Structural Biology Knowledgebase: 1J85 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1J85

Classification: TRANSFERASE

Total Structure Weight: 18427.55

Macromolecule Entities
Molecule Chains Length Organism Details
YibK A 160 Haemophilus influenzae EC#: 2.1.1.207 IUBMB
Gene Name(s): trmL HI_0766
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.195
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.37 α = 90.00
b = 40.37 β = 90.00
c = 165.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-20
  • Released Date: 2003-02-25
  • Deposition author(s): Lim, K., Zhang, H., Toedt, J., Tempcyzk, A., Krajewski, W., Howard, A., Eisenstein, E., Herzberg, O., Structure 2 Function Project (S2F)

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4