1J7L

Crystal Structure of 3',5"-Aminoglycoside Phosphotransferase Type IIIa ADP Complex

Structural Biology Knowledgebase: 1J7L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1J7L

Classification: TRANSFERASE

Total Structure Weight: 62976.20

Macromolecule Entities
Molecule Chains Length Organism Details
AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE A, B 264 Enterococcus faecalis EC#: 2.7.1.95 IUBMB
Gene Name(s): aphA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.220
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 49.71 α = 90.00
b = 91.25 β = 90.00
c = 131.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-17
  • Released Date: 2001-08-08
  • Deposition author(s): Burk, D.L., Hon, W.C., Leung, A.K.-W., Berghuis, A.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4