1J52

Recombinant sperm whale myoglobin in the presence of 7atm xenon

Structural Biology Knowledgebase: 1J52 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.155

Literature

Macromolecules
Sequence Display for 1J52

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 18603.09

Macromolecule Entities
Molecule Chains Length Organism Details
myoglobin A 154 Physeter catodon Mutation: D122N
Gene Name(s): MB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XE
Query on XE

A XENON
Xe
FHNFHKCVQCLJFQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.155
  • Space Group: P 6
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 91.58 α = 90.00
b = 91.58 β = 90.00
c = 45.97 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-08
  • Released Date: 2003-11-11
  • Deposition author(s): Liong, E.C., Phillips Jr., G.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4