1J3H

Crystal structure of apoenzyme cAMP-dependent protein kinase catalytic subunit

Structural Biology Knowledgebase: 1J3H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.257

Literature

Macromolecules
Sequence Display for 1J3H

Classification: TRANSFERASE

Total Structure Weight: 81704.05

Macromolecule Entities
Molecule Chains Length Organism Details
cAMP-dependent protein kinase, alpha-catalytic subunit A, B 350 Mus musculus EC#: 2.7.11.11 IUBMB
Mutation: T197X, C199X, S338X
Gene Name(s): Prkaca Pkaca
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 3 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, B L-PEPTIDE LINKING C4 H10 N O6 P THR
CME
Query on CME
A, B L-PEPTIDE LINKING C5 H11 N O3 S2 CYS
SEP
Query on SEP
A, B L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.257
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.78 α = 90.00
b = 143.60 β = 105.71
c = 62.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-31
  • Released Date: 2003-03-04
  • Deposition author(s): Akamine, P., Madhusudan, Wu, J., Xuong, N.H., Ten Eyck, L.F., Taylor, S.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4