1J2T

Creatininase Mn

Structural Biology Knowledgebase: 1J2T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 1J2T

Classification: Hydrolase

Total Structure Weight: 173276.25

Macromolecule Entities
Molecule Chains Length Organism Details
creatinine amidohydrolase A, B, C..., D, E, FA, B, C, D, E, F 260 Pseudomonas putida EC#: 3.5.2.10 IUBMB
Gene Name(s): crnA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D, E, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D, E, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D, E, F MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.175
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 101.99 α = 90.00
b = 150.74 β = 90.00
c = 167.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-11
  • Released Date: 2004-01-27
  • Deposition author(s): Yoshimoto, T., Tanaka, N., Kanada, N., Inoue, T., Nakajima, Y., Haratake, M., Nakamura, K.T., Xu, Y., Ito, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4