1J25

Crystal structure of archaeal XPF/Mus81 homolog, Hef from Pyrococcus furiosus, nuclease domain, Mn cocrystal

Structural Biology Knowledgebase: 1J25 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1J25

Classification: HYDROLASE

Total Structure Weight: 16171.75

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent RNA helicase, putative A 143 Pyrococcus furiosus Fragment: nuclease domain fragment
Mutation: F55L, R63G
Gene Name(s): PF2015
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.228
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.79 α = 90.00
b = 69.79 β = 90.00
c = 58.51 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-25
  • Released Date: 2003-04-22
  • Deposition author(s): Nishino, T., Komori, K., Ishino, Y., Morikawa, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name