1IYZ

Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1IYZ

Classification: OXIDOREDUCTASE

Total Structure Weight: 32872.08

Macromolecule Entities
Molecule Chains Length Organism Details
QUINONE OXIDOREDUCTASE A 302 Thermus thermophilus EC#: 1.6.5.5 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.219
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 77.63 α = 90.00
b = 77.63 β = 90.00
c = 235.61 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-17
  • Released Date: 2003-07-15
  • Deposition author(s): Shimomura, Y., Kakuta, Y., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • Version 1_0: 2003-07-15

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance