1IYB

Crystal Structure of the Nicotiana glutinosa Ribonuclease NW

Structural Biology Knowledgebase: 1IYB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 1IYB

Classification: HYDROLASE

Total Structure Weight: 46979.68

Macromolecule Entities
Molecule Chains Length Organism Details
Ribonuclease A, B 208 Nicotiana glutinosa EC#: 3.1 IUBMB
Mutation: N133H
Gene Name(s): ngr1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5GP
Query on 5GP

A, B GUANOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O8 P
RQFCJASXJCIDSX-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.212
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.80 α = 90.00
b = 94.30 β = 90.00
c = 98.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-05
  • Released Date: 2003-08-05
  • Deposition author(s): Kawano, S., Kakuta, Y., Kimura, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4