1ISI

Crystal Structure Analysis of BST-1/CD157 complexed with ethenoNAD

Structural Biology Knowledgebase: 1ISI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1ISI

Classification: HYDROLASE

Total Structure Weight: 62602.48

Macromolecule Entities
Molecule Chains Length Organism Details
bone marrow stromal cell antigen 1 A, B 265 Homo sapiens EC#: 3.2.2.6 IUBMB
Fragment: Extracellular region
Mutation: N34D, N63T, N116A
Gene Name(s): BST1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ENQ
Query on ENQ

A, B [[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-imidazo[2,1- f]purin-6-ium-3-yl)oxolan-2-yl]methoxy-oxidanidyl- phosphoryl] [(2R,3S,4R,5R)-3,4-dihydroxy- 5-oxidanidyl-oxolan-2-yl]methyl phosphate
C17 H22 N5 O14 P2
YOABXPSQFWZTMU-QJWJOKBXSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NCA
Query on NCA

A, B NICOTINAMIDE
C6 H6 N2 O
DFPAKSUCGFBDDF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.219
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.94 α = 90.00
b = 112.74 β = 90.00
c = 130.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-12-05
  • Released Date: 2002-03-13
  • Deposition author(s): Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update