1IOD

CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE COAGULATION FACTOR X BINDING PROTEIN FROM SNAKE VENOM AND THE GLA DOMAIN OF FACTOR X

Structural Biology Knowledgebase: 1IOD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1IOD

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 35478.33

Macromolecule Entities
Molecule Chains Length Organism Details
COAGULATION FACTOR X BINDING PROTEIN A 129 Deinagkistrodon acutus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
COAGULATION FACTOR X BINDING PROTEIN B 123 Deinagkistrodon acutus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
COAGULATION FACTOR X GLA DOMAIN G 44 Bos taurus EC#: 3.4.21.6 IUBMB
Fragment: GLA DOMAIN(RESIDUES 41-84)
Gene Name(s): F10 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B, G CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CGU
Query on CGU
G L-PEPTIDE LINKING C6 H9 N O6 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.201
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 99.76 α = 90.00
b = 99.76 β = 90.00
c = 90.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-27
  • Released Date: 2001-06-27
  • Deposition author(s): Mizuno, H., Fujimoto, Z., Atoda, H., Morita, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4