1IO4

CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.247

Literature

Macromolecules
Sequence Display for 1IO4

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 65658.31


Macromolecule Entities
Molecule Chains Length Organism Details
CAAT/ENHANCER BINDING PROTEIN BETA A, B 78 Homo sapiens Fragment: BZIP DOMAIN
Gene Name(s): CEBPB Gene View TCF5 PP9092
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RUNT-RELATED TRANSCRIPTION FACTOR 1 C 123 Mus musculus Fragment: RUNT DOMAIN
Gene Name(s): Runx1 Aml1 Cbfa2 Pebp2ab
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CORE-BINDING FACTOR, BETA SUBUNIT D 141 Mus musculus Fragment: CORE DOMAIN
Gene Name(s): Cbfb Pebp2b Pebpb2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
CSF-1R PROMOTER E 26 synthetic
CSF-1R PROMOTER F 26 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AU
Query on AU

C, D GOLD ION
Au
ZBKIUFWVEIBQRT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.247
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 121.11 α = 90.00
b = 163.60 β = 90.00
c = 109.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-10
  • Released Date: 2001-03-12
  • Deposition author(s): Tahirov, T.H., Ogata, K.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance