1IL9

STRUCTURE OF RICIN A CHAIN BOUND WITH INHIBITOR 8-METHYL-9-OXOGUANINE

Structural Biology Knowledgebase: 1IL9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.247

Literature

Macromolecules
Sequence Display for 1IL9

Classification: HYDROLASE

Total Structure Weight: 30103.15

Macromolecule Entities
Molecule Chains Length Organism Details
RICIN A CHAIN A 267 Ricinus communis EC#: 3.2.2.22 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MOG
Query on MOG

A 5-AMINO-2-METHYL-6H-OXAZOLO[5,4-D]PYRIMIDIN- 7-ONE
8-METHYL-9-OXOGUANINE (Synonym)
C6 H6 N4 O2
NEKSCFHMQPOHBF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MOG IC50: 400000 nM (100) BindingDB

N/A in BindingMoad
IC50: 400000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.247
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.04 α = 90.00
b = 67.84 β = 113.26
c = 49.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-07
  • Released Date: 2002-01-16
  • Deposition author(s): Miller, D.J., Ravikumar, K., Shen, H., Suh, J.-K., Kerwin, S.M., Robertus, J.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4