1IIC

Crystal Structure of Saccharomyces cerevisiae N-myristoyltransferase with Bound MyristoylCoA

Structural Biology Knowledgebase: 1IIC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 1IIC

Classification: TRANSFERASE

Total Structure Weight: 99984.95

Macromolecule Entities
Molecule Chains Length Organism Details
PEPTIDE N-myristoyltransferase A, B 422 Saccharomyces cerevisiae EC#: 2.3.1.97 IUBMB
Fragment: N-myristoyltransferase (N-terminal 33 residues deleted)
Gene Name(s): NMT1 Gene View CDC72 YLR195C L8167.14
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MYA
Query on MYA

A, B TETRADECANOYL-COA
MYRISTOYL-COA (Synonym)
C35 H62 N7 O17 P3 S
DUAFKXOFBZQTQE-GLTUGWJXDB
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.236
  • Space Group: P 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 75.13 α = 90.00
b = 97.06 β = 90.00
c = 141.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-22
  • Released Date: 2001-05-02
  • Deposition author(s): Farazi, T.A., Waksman, G., Gordon, J.I.

Revision History

  • 2011-11-02
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4