1IFQ

Sec22b N-terminal domain

Structural Biology Knowledgebase: 1IFQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1IFQ

Classification: PROTEIN TRANSPORT

Total Structure Weight: 32224.07

Macromolecule Entities
Molecule Chains Length Organism Details
vesicle trafficking protein Sec22b A, B 138 Mus musculus Fragment: N-Terminal Domain (residues 2-127)
Mutation: M6M, M20M, M59M
Gene Name(s): Sec22b Sec22l1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.231
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.24 α = 90.00
b = 57.06 β = 90.00
c = 99.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-13
  • Released Date: 2001-05-02
  • Deposition author(s): Gonzalez Jr., L.C., Weis, W.I., Scheller, R.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update