1IE9

Crystal Structure Of The Nuclear Receptor For Vitamin D Ligand Binding Domain Bound to MC1288


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1IE9

Classification: GENE REGULATION

Total Structure Weight: 29808.51

Macromolecule Entities
Molecule Chains Length Organism Details
VITAMIN D3 RECEPTOR A 259 Homo sapiens Gene Name(s): VDR Gene View NR1I1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VDX
Query on VDX

A 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A- METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}- 4-METHYLENE-CYCLOHEXANE-1,3-DIOL
1,25 DIHYDROXY VITAMIN D3 (Synonym)
C27 H44 O3
GMRQFYUYWCNGIN-NKMMMXOESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
VDX N/A in BindingDB
N/A in BindingMoad
Kd: 0.065 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.214
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 44.94 α = 90.00
b = 51.42 β = 90.00
c = 132.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-09
  • Released Date: 2001-05-16
  • Deposition author(s): Tocchini-Valentini, G., Rochel, N., Wurtz, J.M., Mitschler, A., Moras, D.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2017-08-16
    Type: Refinement description, Source and taxonomy