1IE8

Crystal Structure Of The Nuclear Receptor For Vitamin D Ligand Binding Domain Bound to KH1060

Structural Biology Knowledgebase: 1IE8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 1IE8

Classification: GENE REGULATION

Total Structure Weight: 29852.76

Macromolecule Entities
Molecule Chains Length Organism Details
VITAMIN D3 RECEPTOR A 259 Homo sapiens Gene Name(s): VDR Gene View NR1I1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
KH1
Query on KH1

A 5-(2-{1-[1-(4-ETHYL-4-HYDROXY-HEXYLOXY)-ETHYL]- 7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE}-ETHYLIDENE)- 4-METHYLENE-CYCLOHEXANE-1,3-DIOL
26, (Synonym)
C29 H48 O4
KLZOTDOJMRMLDX-YBBVPDDNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.212
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.49 α = 90.00
b = 51.87 β = 90.00
c = 131.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-09
  • Released Date: 2001-05-16
  • Deposition author(s): Tocchini-Valentini, G., Rochel, N., Wurtz, J.M., Mitschler, A., Moras, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4