1IDC

ISOCITRATE DEHYDROGENASE FROM E.COLI (MUTANT K230M), STEADY-STATE INTERMEDIATE COMPLEX DETERMINED BY LAUE CRYSTALLOGRAPHY

Structural Biology Knowledgebase: 1IDC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.169

Literature

Macromolecules
Sequence Display for 1IDC

Classification: OXIDOREDUCTASE (NAD(A)-CHOH(D))

Total Structure Weight: 46026.45

Macromolecule Entities
Molecule Chains Length Organism Details
ISOCITRATE DEHYDROGENASE A 416 Escherichia coli EC#: 1.1.1.42 IUBMB
Mutation: K230M
Details: RATE-LIMITED ENOLATE INTERMEDIATE
Gene Name(s): icd icdA icdE b1136 JW1122
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OXS
Query on OXS

A 2-OXALOSUCCINIC ACID
C6 H6 O7
UFSCUAXLTRFIDC-REOHCLBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.169
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 105.10 α = 90.00
b = 105.10 β = 90.00
c = 150.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-01-18
  • Released Date: 1996-03-08
  • Deposition author(s): Bolduc, J.M., Dyer, D.H., Scott, W.G., Singer, P., Sweet, R.M., Koshland Junior, D.E., Stoddard, B.L.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4