1ICQ

CRYSTAL STRUCTURE OF 12-OXOPHYTODIENOATE REDUCTASE 1 FROM TOMATO COMPLEXED WITH 9R,13R-OPDA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1ICQ

Classification: OXIDOREDUCTASE

Total Structure Weight: 86383.59

Macromolecule Entities
Molecule Chains Length Organism Details
12-OXOPHYTODIENOATE REDUCTASE 1 A, B 376 Solanum lycopersicum EC#: 1.3.1.42 IUBMB
Mutation: R142M
Gene Name(s): OPR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A, B FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OPD
Query on OPD

A, B 9R,13R-12-OXOPHYTODIENOIC ACID
9R,13R-OPDA (Synonym)
C18 H28 O3
PMTMAFAPLCGXGK-HZPDHXFCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.198
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 53.58 α = 62.42
b = 72.76 β = 85.19
c = 72.62 γ = 79.96

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-02
  • Released Date: 2001-05-16
  • Deposition author(s): Breithaupt, C., Strassner, J., Breitinger, U., Huber, R., Macheroux, P., Schaller, A., Clausen, T.

Revision History

  • Version 1_0: 2001-05-16

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance