1IBD

X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT V29A

Structural Biology Knowledgebase: 1IBD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1IBD

Classification: OXIDOREDUCTASE

Total Structure Weight: 15914.85

Macromolecule Entities
Molecule Chains Length Organism Details
CU,ZN SUPEROXIDE DISMUTASE A 151 Photobacterium leiognathi EC#: 1.15.1.1 IUBMB
Mutation: V29A, T31I
Gene Name(s): sodC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.214
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 85.94 α = 90.00
b = 85.94 β = 90.00
c = 98.79 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-03-28
  • Released Date: 2001-05-09
  • Deposition author(s): Stroppolo, M.E., Pesce, A., D'Orazio, M., O'Neill, P., Bordo, D., Rosano, C., Milani, M., Battistoni, A., Bolognesi, M., Desideri, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4