1I9R

STRUCTURE OF CD40L IN COMPLEX WITH THE FAB FRAGMENT OF HUMANIZED 5C8 ANTIBODY

Structural Biology Knowledgebase: 1I9R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 1I9R

Classification: CYTOKINE / IMMUNE SYSTEM

Total Structure Weight: 189192.61

Macromolecule Entities
Molecule Chains Length Organism Details
CD40 LIGAND A, B, C 146 Homo sapiens Fragment: RESIDUES 116-261
Gene Name(s): CD40LG Gene View CD40L TNFSF5 TRAP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IMMUNOGLOBULIN H H, K, X 219 Homo sapiens
IMMUNOGLOBULIN L L, M, Y 218 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

H, K, X ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.233
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 224.48 α = 90.00
b = 129.91 β = 109.60
c = 96.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-03-20
  • Released Date: 2002-03-20
  • Deposition author(s): Karpusas, M., Lucci, J., Ferrant, J., Benjamin, C., Hsu, Y.-M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4