1HY5

CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF YOPE-YERSINIA PESTIS GAP EFFECTOR PROTEIN.

Structural Biology Knowledgebase: 1HY5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 1HY5

Classification: toxin

Total Structure Weight: 29529.71

Macromolecule Entities
Molecule Chains Length Organism Details
YERSINIA PESTIS VIRULENCE PROTEIN YOPE A, B 136 Yersinia pestis Fragment: C-TERMINAL DOMAIN (RESIDUES 90-219); BACTERIAL GTPASE ACTIVATING PROTEIN (GAP DOMAIN)
Mutation: M1096M, M1118M, M1128M, M1154M, M1212M, M1219M
Gene Name(s): yopE yop25 YPCD1.06 y5068 y0077 YP_pCD81
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.197
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.69 α = 90.00
b = 71.98 β = 113.06
c = 62.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-18
  • Released Date: 2002-02-06
  • Deposition author(s): Evdokimov, A.G., Tropea, J.E., Routzahn, K.M., Waugh, D.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4