1HPU

5'-NUCLEOTIDASE (CLOSED FORM), COMPLEX WITH AMPCP

Structural Biology Knowledgebase: 1HPU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1HPU

Classification: HYDROLASE

Total Structure Weight: 235253.25

Macromolecule Entities
Molecule Chains Length Organism Details
5'-NUCLEOTIDASE A, B, C, D 525 Escherichia coli EC#: 3.1.3.5 IUBMB 3.6.1.45 IUBMB
Gene Name(s): ushA b0480 JW0469
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A12
Query on A12

A, B, C, D PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
ALPHA,BETA-METHYLENEADENOSINE-5'-DIPHOSPHATE (Synonym)
C11 H17 N5 O9 P2
OLCWZBFDIYXLAA-IOSLPCCCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.207
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.40 α = 110.79
b = 89.96 β = 106.43
c = 96.26 γ = 107.76

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-12-13
  • Released Date: 2002-03-20
  • Deposition author(s): Knoefel, T., Straeter, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4