1HPC

REFINED STRUCTURES AT 2 ANGSTROMS AND 2.2 ANGSTROMS OF THE TWO FORMS OF THE H-PROTEIN, A LIPOAMIDE-CONTAINING PROTEIN OF THE GLYCINE DECARBOXYLASE

Structural Biology Knowledgebase: 1HPC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.185

Literature

Macromolecules
Sequence Display for 1HPC

Classification: TRANSIT PEPTIDE

Total Structure Weight: 28337.84

Macromolecule Entities
Molecule Chains Length Organism Details
H PROTEIN OF THE GLYCINE CLEAVAGE SYSTEM A, B 131 Pisum sativum EC#: 1.4.4.2 IUBMB
Gene Name(s): GDCSH GCDH Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LPA
Query on LPA

B LIPOIC ACID
5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid (Synonym)
C8 H14 O2 S2
AGBQKNBQESQNJD-SSDOTTSWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LPB
Query on LPB

A 5-[(3S)-1,2-dithiolan-3-yl]pentanoic acid
C8 H14 O2 S2
AGBQKNBQESQNJD-ZETCQYMHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.185
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 57.30 α = 90.00
b = 57.30 β = 90.00
c = 136.80 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-02-17
  • Released Date: 1995-05-08
  • Deposition author(s): Pares, S., Cohen-Addad, C., Sieker, L., Neuburger, M., Douce, R.

Revision History

  • 2014-04-16
    Type: Binding sites and description | Details: corrected site records
  • 2011-10-05
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4