1HP1

5'-NUCLEOTIDASE (OPEN FORM) COMPLEX WITH ATP

Structural Biology Knowledgebase: 1HP1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1HP1

Classification: HYDROLASE

Total Structure Weight: 58231.27

Macromolecule Entities
Molecule Chains Length Organism Details
5'-NUCLEOTIDASE A 516 Escherichia coli EC#: 3.1.3.5 IUBMB 3.6.1.45 IUBMB
Mutation: ΔV323, ΔT324, ΔW325, ΔE326, ΔD327, ΔG328, ΔK329, ΔS330, ΔE331
Gene Name(s): ushA b0480 JW0469
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO3
Query on CO3

A CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.176
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.70 α = 90.00
b = 83.70 β = 90.00
c = 181.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-12-12
  • Released Date: 2002-03-20
  • Deposition author(s): Knoefel, T., Straeter, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4