1HI3

EOSINOPHIL-DERIVED NEUROTOXIN (EDN) -ADENOSINE-2'-5'-DIPHOSPHATE COMPLEX

Structural Biology Knowledgebase: 1HI3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1HI3

Classification: HYDROLASE

Total Structure Weight: 16039.04

Macromolecule Entities
Molecule Chains Length Organism Details
EOSINOPHIL-DERIVED NEUROTOXIN A 135 Homo sapiens EC#: 3.1.27.5 IUBMB
Gene Name(s): RNASE2 Gene View EDN RNS2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A2P
Query on A2P

A ADENOSINE-2'-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
AEOBEOJCBAYXBA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
A2P N/A in BindingDB
Ki: 64000 nM  BindingMOAD
Ki: 64000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.193
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 52.53 α = 90.00
b = 56.18 β = 90.00
c = 41.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-02
  • Released Date: 2001-05-31
  • Deposition author(s): Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4