1HG4

Ultraspiracle ligand binding domain from Drosophila melanogaster

Structural Biology Knowledgebase: 1HG4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 1HG4

Classification: NUCLEAR HORMONE RECEPTOR

Total Structure Weight: 192025.86

Macromolecule Entities
Molecule Chains Length Organism Details
ULTRASPIRACLE A, B, C..., D, E, FA, B, C, D, E, F 279 Drosophila melanogaster Fragment: LIGAND-BINDING DOMAIN RESIDUES 230-508
Details: PHOSPHATIDIC ACID MODELLED IN LIGAND BINDING POCKET OF 6 PROTEIN MONOMERS
Gene Name(s): usp Cf1 NR2B4 CG4380
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LPP
Query on LPP

A, B, C, D, E, F 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE
1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE; L- B,G-DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT; 3- SN-PHOSPHATIDIC ACID; 1,2-DIPALMITOYLDISODIUM SALT (Synonym)
C35 H69 O8 P
PORPENFLTBBHSG-MGBGTMOVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.248
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 37.98 α = 85.57
b = 86.19 β = 85.94
c = 137.00 γ = 83.09

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-12-12
  • Released Date: 2001-02-23
  • Deposition author(s): Schwabe, J.W.R., Clayton, G.M.

Revision History

  • 2015-02-11
    Type: Function and keywords | Details: KEYWDS
  • 2015-02-11
    Type: Citation | Details: JRNL
  • 2015-02-11
    Type: Other | Details: REMARK 525,MASTER,REMARK 280
  • 2015-02-11
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2015-02-11
    Type: Geometry validation | Details: REMARK 500
  • 2015-02-11
    Type: Polymer description | Details: COMPND
  • 2015-02-11
    Type: Refinement description | Details: REMARK 3
  • 2015-02-11
    Type: Source and taxonomy | Details: SOURCE
  • 2015-02-11
    Type: Entry title | Details: TITLE
  • 2015-02-11
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2015-02-11
    Type: Version format compliance | Details: REMARK 4