1HFS

CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN FIBROBLAST STROMELYSIN-1 INHIBITED WITH THE N-CARBOXY-ALKYL INHIBITOR L-764,004

Structural Biology Knowledgebase: 1HFS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1HFS

Classification: HYDROLASE

Total Structure Weight: 18902.96

Macromolecule Entities
Molecule Chains Length Organism Details
STROMELYSIN-1 A 160 Homo sapiens EC#: 3.4.24.17 IUBMB
Gene Name(s): MMP3 Gene View STMY1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
L04
Query on L04

A 6-(4'-FLUORO-BIPHENYL-4-YL)-4-(3-METHYL-1- PHENYLCARBAMOYL-BUTYLCARBAMOYL)-2-[4-(1-OXO- 1,3-DIHYDRO-ISOINDOL-2-YL)-BUTYL]-HEXANOIC ACID
L004 (Synonym)
C43 H48 F N3 O5
WSHMSPGZDPZGRV-GZYXPWJKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
L04 Ki: 2 nM (100) BindingDB

Ki: 2 nM  BindingMOAD
Ki: 2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.189
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.14 α = 90.00
b = 85.35 β = 90.00
c = 55.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-02-13
  • Released Date: 1998-02-18
  • Deposition author(s): Becker, J.W.

Revision History

  • 2012-02-22
    Type: Citation | Details: Replace et al in citation author list with correct authors
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4