1HEU

ATOMIC X-RAY STRUCTURE OF LIVER ALCOHOL DEHYDROGENASE CONTAINING CADMIUM AND A HYDROXIDE ADDUCT TO NADH

Structural Biology Knowledgebase: 1HEU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.149
  • R-Value Work: 0.118

Literature

Macromolecules
Sequence Display for 1HEU

Classification: OXIDOREDUCTASE

Total Structure Weight: 81720.09

Macromolecule Entities
Molecule Chains Length Organism Details
ALCOHOL DEHYDROGENASE E CHAIN A, B 374 Equus caballus EC#: 1.1.1.1 IUBMB
Details: ADDUCT BETWEEN NC6 OF NADH AND ZINC BOUND HYDROXIDE
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRD
Query on MRD

A, B (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.149
  • R-Value Work: 0.118
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.18 α = 104.30
b = 44.57 β = 101.07
c = 94.10 γ = 70.67

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-26
  • Released Date: 2001-05-31
  • Deposition author(s): Meijers, R., Morris, R.J., Adolph, H.W., Merli, A., Lamzin, V.S., Cedergen-Zeppezauer, E.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4