1H97

Trematode hemoglobin from Paramphistomum epiclitum

Structural Biology Knowledgebase: 1H97 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Observed: 0.121

Literature

Macromolecules
Sequence Display for 1H97

Classification: OXYGEN TRANSPORT

Total Structure Weight: 34899.62

Macromolecule Entities
Molecule Chains Length Organism Details
GLOBIN-3 A, B 147 Paramphistomum epiclitum Mutation: I44S
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Observed: 0.121
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 38.70 α = 90.00
b = 83.70 β = 90.00
c = 94.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-03-02
  • Released Date: 2001-06-21
  • Deposition author(s): Pesce, A., Dewilde, S., Kiger, L., Milani, M., Ascenzi, P., Marden, M.C., Van Hauwaert, M.L., Vanfleteren, J., Moens, L., Bolognesi, M.

Revision History

  • 2013-12-04
    Type: Source and taxonomy | Details: SOURCE
  • 2012-09-19
    Type: Version format compliance | Details: REMARK 4
  • 2012-09-19
    Type: Geometry validation | Details: REMARK 500
  • 2012-09-19
    Type: Advisory | Details: CAVEAT
  • 2012-09-19
    Type: Atom nomenclature | Details: HETATM
  • 2012-09-19
    Type: Other | Details: ANISOU,HEADER,REMARK 100,REMARK 525,MASTER
  • 2012-09-19
    Type: Refinement description | Details: REMARK 3
  • 2012-09-19
    Type: Linkage | Details: CONECT,LINK
  • 2012-09-19
    Type: Biological assembly | Details: REMARK 350
  • 2012-09-19
    Type: Non-polymer description | Details: HETSYN,FORMUL,REMARK 620
  • 2012-09-19
    Type: Data collection | Details: REMARK 200
  • 2012-09-19
    Type: Citation | Details: JRNL
  • 2012-09-19
    Type: Function and keywords | Details: KEYWDS