1H8S

Three-dimensional structure of anti-ampicillin single chain Fv fragment complexed with the hapten.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1H8S

Classification: ANTI-AMPICILLIN ANTIBODIES

Total Structure Weight: 54555.00

Macromolecule Entities
Molecule Chains Length Organism Details
MUTANT AL2 6E7P9G A, B 252 Mus musculus Fragment: FV FRAGMENT
Details: SINGLE CHAIN FV ANTIBODY IN WHICH THE VL AND VH FRAGMENTS ARE JOINED BY A GGGGSGGGGSGGGGSGGGGS LINKER

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AIC
Query on AIC

A (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}- 3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE- 2-CARBOXYLIC ACID
AMPICILLIN; D(-)-ALPHA-AMINOBENZYLPENICILLIN; 6- [D(-)-ALPHA-AMINOPHENYLLACETAMIDO]PENICILLANIC ACID (Synonym)
C16 H19 N3 O4 S
AVKUERGKIZMTKX-NJBDSQKTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AIC N/A in BindingDB
Kd: 1540 nM  BindingMOAD
Kd: 1540 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.204
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 58.93 α = 90.00
b = 89.27 β = 90.00
c = 94.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-15
  • Released Date: 2001-08-02
  • Deposition author(s): Burmester, J., Spinelli, S., Pugliese, L., Krebber, A., Honegger, A., Jung, S., Schimmele, B., Cambillau, C., Pluckthun, A.

Revision History

  • Version 1_0: 2001-08-02

    Type: Initial release