1H82

STRUCTURE OF POLYAMINE OXIDASE IN COMPLEX WITH GUAZATINE

Structural Biology Knowledgebase: 1H82 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1H82

Classification: OXIDOREDUCTASE

Total Structure Weight: 166318.17

Macromolecule Entities
Molecule Chains Length Organism Details
POLYAMINE OXIDASE A, B, C 472 Zea mays EC#: 1.5.3.14 IUBMB 1.5.3.15 IUBMB
Fragment: FAD-BINDING DOMAIN RESIDUES 29-500
Gene Name(s): PAO
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GZZ
Query on GZZ

A, B, C N-{8-[(8-{[(E)-AMINO(IMINO)METHYL]AMINO}OCTYL)AMINO]OCTYL}GUANIDINE
GUAZATINE (Synonym)
C18 H41 N7
RONFGUROBZGJKP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B, C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

C ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FCA
Query on FCA

C ALPHA-D-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-PHYPRBDBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GZZ Ki: 7.5 nM (100) BindingDB

Ki: 7.5 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.199
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 184.97 α = 90.00
b = 184.97 β = 90.00
c = 282.24 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-24
  • Released Date: 2001-01-31
  • Deposition author(s): Binda, C., Coda, A., Angelini, R., Federico, R., Ascenzi, P., Mattevi, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4